PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010096853.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C2H2
Protein Properties Length: 266aa    MW: 29205 Da    PI: 4.6393
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010096853.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.00016239262123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     ++C+ C++sF +   L++H +  H
  XP_010096853.1 239 FQCKSCNRSFGSDIALQSHTKAkH 262
                     89*****************99877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.60.120.3407.5E-4373IPR024057Nucleoplasmin core domain
PROSITE profilePS5015711.281239266IPR007087Zinc finger, C2H2
PROSITE patternPS000280241262IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MEFWGVEVKS GESFVVQEEY ETILHLSLAC LGEVKKDKGS EPVHLFAKVD DKKFVIGILS  60
SEKFPQISFD LVFEKDFELS HNWKNGNEYS DSEDEIAPVP IELGQSSLQA KPEEKNVDVN  120
KDVKSDQKAQ VKSEEESSDD DDESEDEDDS EDEETDGSEE EEENKVDISK KRPAEASKKT  180
SGGDKKAKFQ TPEKAVAKTS GNKVGGHTAT PHPAKQAGKT AAKNEQQPKQ QAPKAGGAFQ  240
CKSCNRSFGS DIALQSHTKA KHATAK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010096853.10.0Histone deacetylase HDT1
TrEMBLW9RRE30.0W9RRE3_9R
STRINGPGSC0003DMT4000216442e-69(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10253067
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.27e-25histone deacetylase 3